| MHC class II molecules are heterodimers composed of an a and a b subunit. | |
| The a subunit is a 33 kDa polypeptide and the b subunit is 28kDa. Both subunits are inserted in the membrane, and are encoded by the MHC. | |
| The membrane-distal, N-terminal structural domains of the a subunit and the b subunit - i.e., a1 and b1 - associate to form the peptide-binding pocket and the membrane-distal region of the molecule. | |
| The membrane-proximal, C-terminal structural domains of the a subunit and the b subunit - i.e., a2 and b2 - associate to form the CD4 binding site of the molecule. | |
| MHC class II ab exhibit a tendency to self-associate forming (ab)2 "dimers of dimers". |