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Presentations

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Structure Projects and Presentations
MCDB 108AL,2000-2012
Duane W. Sears
Instructional Biochemistry at UCSB
Department of Molecular, Cellular, and Developmental Biology
University of California, Santa Barbara, CA 93106-9625

Download and extract the JSmol Template e zip file and open the ala-jmol.htm webpage with Firefox (but not Chrome) .to display an interactive 3-D image of alanine.

The pdb file displayed by this webpage can altered by downloading the pdb file into the same folder and edited with a text editor

 
 

Fall 2012 
Fall 2011
Fall 2010
Fall 2007
  • HIV-1 Reverse Transcriptase in Complex with Nevirapine
  • Grb10 SH2
  • Translocator Domain of the Autotransporter NaIP within Neisseria meningitidis
  • Extracellular fibrinogen binding protein
  • Human Thrombin Inhibitor
  • Plasmodium erythrocyte-binding ligand, PfEBA-140
  • Retinoic Acid Mediated T-reg Differentiation
  • Neutralizing Anti-HIV-1 Antibody (VRC01)
  • Neutralizing Anti-HIV gp120/gp41 Antibodies
  • Human Prion Protein Dimer
  • Microbial Vitamin B Metabolite Presentation by MHC I-like MR1 to Mucosal-Associated Invariant T (MAIT) Cells
  • HLA-DQ8-Restricted Gliadin Peptides and Celikac Disease
  • µ-opioid Receptor/Morphinan Antagonist Complex
  • Malarial Dihydrofolate Reductase as a Drug Target
  • Hepatocyte Growth Factor Receptor
  • Circadian Clock Protein KaiC
  • Catalytic Subunit of T. Castaneum TERT Polymerase
  • Cobra Venom Factor
  • Extracellular Signal-Regulated Kinase 2
  • Human Ribonuclease Inhibitor
  • Atragin
  • SV40 Large Tumor Antigen
  • PhoP-PhoQ Regulatory System
  • Retinoblastoma Protein (pRB)/E2F Complex
  • Vibrio harveyi Luciferase/FMN Complex
  • Botulinum Toxin Serotype A
  • Shiga Toxin 1
  • Pertussis Toxin/ATP Complex
  • Fasciculin-II Toxin Complex with Acetylcholinesterase
  • DOPA Decarboxylase
  • ToxT Transcriptional Regulator in Vibrio cholerae
  • Human Nicotinamide N-Methyltransferase
  • Amyloid beta
  • AZT-Resistant HIV-1 Reverse Transcriptase
  • Beta Secretase
  • Inhibition of Factor Xa
  • SARS Coronavirus Main Porteinase
  • Cocaethyolene Synthesis and Pathophysiology
  • Human IgE anti-Grass Pollen Allergen Antibody
  • Anti-Botulinum Toxin Lama Antibody
  • Guanine-Binding Riboswitch
Fall 2008
  • ATP Synthase
  • Cyclooxygenase
  • Firefly Luciferase
  • Aldehyde Dehydrogenase
  • Cathespsin and Procathepsin
  • Leptin
  • Alpha-synuclein
  • Antigen Binding by Human Major Histocompatibility Complex Class I HLA-A2
  • UAgTx2-MTX: Chimeric Scorpion Toxin
  • Clostridium botulinum Neurotoxin
  • Leiurus quinquestriatus hebraeus scorpion LqhαIT Toxin
  • Diphtheria Toxin (DT) and its EF-2 Binding Domain
  • Botulinum Neurotoxin Serotype A
  • Creatine Kinase
  • Pepsin/Pepsin Inhibitor-3 Complex
  • Human c-Src Activation and Regulation
  • Anti-Hemoglobin Stabilizing Protein
  • Myelin Oligodendrocyte Glycoprotein-(8-18C5)/Fab Complex
  • A Human Superoxide Dismutase Mutation
  • Three Human Superoxide Dismutase Mutations
  • CuZn Superoxide Dismutase
  • p53 Tumor Suppressor-DNA Complex
  • Unliganded Human Immunodeficiency Virus Type 1 Reverse Transcriptase
  • Mason-Pfizer Monkey Virus Matrix Protein
  • Human Papillomavirus (HPV) E6 Polypeptide/Tumor Suppressor Complex
  • Human Major Histocompatibility Complex Class I: HLA-A2
  • Aequorea victoria Jellyfish Green Fluorescent Protein (GFP)
  • Tetanus Neurotoxin Catalytic Domain
  • Cholera Toxin Activation
  • Shiga-like Toxin Type 2
  • Bee Venom Hyalurnidase
  • NADPH-Cytochrome P450 Reductase

Fall 2005
Fall 2004
Fall 2001
Fall 2000
  • Troponin

  • Flu Virus Hemagglutinin-Neuraminidase

  • Monoamine Oxidase

  • Alcohol Dehydrogenase
  • (β-3)2 Alcohol Dehydrogenase

  • Interleukin-1β Converting Enzyme

  • Monoamine Oxidase B

  • Cyclooxygenase-2 (COX-2)

  • Human DNA Photolyase

  • Anacystis nidulans DNA Photolyase

  • Bacterial and Dinoflagellate Luciferases

  • Helicobacter Pylori Urease

  • Dicer, a dsRNA Hydrolase

  • MC159, a Viral Flice/caspase-8 inhibitory protein (v-FLIP)

  • Mp53 Tumor Suppressor Oligomerization Domain

  • Varicella Zoster Virus Protease

  • Human Prion Protein

  • Neoculin

  • Hirudin-Thrombin Complex

  • Firefly Luciferase

  • Isoleucyl tRNA Synthetase

  • Alpha- and Beta Carbonic Anhydrases

  • Horse Heart Cytochrome C

  • HIV-1 Reverse Transcriptase

  • Human Phosphodiesterase 5

  • p53 Tumor Suppressor

  • Insulin-like Growth Factor (IGF) Binding Domain of IGF0binding Protein-5

  • Human Grown Horman

  • Mammalian Orexin Sleep Regulator

  • Acetylcholine Receptor

  • Nogo Receptor

  • Human Transthyretin, a Thyroxine (T4) and Retinol Transport Protein

  • Collagen

  • Ovine Prion

  • Anthrax Protective Antigen

  • Centruroides noxius Hoffmann Scorpion Toxin 2/Antibody Complex

  • SmIIIA Conotoxin of the Conus stercusmuscarum Fly Speck Marine Cone Snail

  • Triosephonate Isomerase
    Alpha Amylase

  • Alcohol Dehydrogenase

  • Brugia Malayi Cyclophilin
    Eukaryotic Release Factor 1

  • Human Insulin

  • Carlmodulin/smMLCK Complex

  • Lambda-CRO Protein/OR3 Complex

  • Matrix Protein VP40 Ebola Virus

  • Streptomyces lividans K+ Channel (Kcsa)

  • αVβ3 Integrin

  • Cholera Toxin B Subunit

  • Alcohol Dehydrogenase

  • ATcase

  • DNA Gyrase

  • Metallo-β-lactamase

  • Coagulation Factor Xa

  • Erythropoietin

  • Botulinum Neurotoxin Type A

  • Taiwan Coba Cardiotoxin V

  • Human Prion Proteins

  • Satellite Tobacco Mosaic Virus

  • Anti-HIV Antibodies
    K+ Channel Protein

  • CD4 Receptor

  • Progesterone Receptor Protein

  • Fas Ligand &  Fas Death Domain

  • Skeletal Troponin C

©
Duane W. Sears and Holly I. Rich
Revised: December 8, 2016